H4: GenBank Sequences[The mtDNA H Haplogroup Project] 

The mtDNA H Haplogroup Project
 

H4: GenBank Sequences

GenBank is the central repository for genome sequences from private, medical, and academic research. These samples have been extracted from Ian Logan's Greese Monkey script. They are sorted according to the current tree.

The current tree for Haplogroup H follows Roostalu 2007.

  • H { A2706A,C7028C}
    • H*
    • ..
    • H4 {C3992T,T5004C,G9123A}
      • H4a {A4024G,C14365T,A14582G}
        • H4a1 {G8269A}
          • H4a1a {A10044G}
      • H4b {T10166C} *..
Accession # This is the unique ID used by GenBank to catalog sequences.
Population The country or ethnic group the sample came from as provided by the author.
Author The lead author of the paper or the submiting instatution.
Haplogroup The haplogroup designation as given by the submition.
HVR2 Hypervariable Region 2 (00001-00574)
Coding Region The Coding Region (00575-16000)
HVR1 Hypervariable Region 1 (16001-16569)


H4
{A2706A,C7028C → C3992T,T5004C,G9123A}
Accession #PopulationAuthorHaplogroupHVR2Coding RegionHVR1
AY738950 Italy Achilli H4 A263G 315.1C C522- A523- A750G A1438G C3992T A4024G A4769G T5004C T7581C A8860G G9123A C14365T A14582G A15326G G15497A G15930A A16164G
AY495123.2 European Coble H4 T152C A263G 315.1C C522- A523- A750G A1438G C3992T A4024G A4769G T5004C T7741C T8433C A8860G T8975Y G9123A C14365T A14582G A15326G CRS


H4a
{A2706A,C7028C → C3992T,T5004C,G9123A →A4024G,C14365T,A14582G}
Accession #PopulationAuthorHaplogroupHVR2Coding RegionHVR1
EF222251 Grzybowski H4 A93G A263G 309.1C 309.2C 315.1C A750G A1438G A2706G A4769G G 5821A C7028T A8860G A9151G A15326G T16311C
DQ523646 Sardinia Fraumene H4 A263G A750G A1438G C3992T A4024G A4769G T5004C G7356A G7521A A8860G G9123A C14365T A14582G A15326G CRS
EF177440 Portugal Pereira H4 A263G 315.1C C522- A523- A750G A1438G C3992T A4024G A4769G T5004C G5147A A8860G G9123A C14365T A14582G A15326G T15394C A16037G A16162G


H4a1
{A2706A,C7028C → C3992T,T5004C,G9123A →A4024G,C14365T,A14582G → G8269A}
Accession #PopulationAuthorHaplogroupHVR2Coding RegionHVR1
EU051827 FTDNA H4a T152C A263G 309.1C 315.1C C522- A523- A750G A1027G A1438G C3992T A4024G A4769G T5004C A7894G G8269A A8860G G9123A C14365T A14582G A15326G T16209C
DQ358977 Detjen H4 A263G A750G A1438G C3992T A4024G A4769G T5004C G8269A A8860G G9123A C14365T A14582G A15326G C16104T C16260T
EU636711 Denmark FTDNA H4a A263G 315.1C C522- A523- A750G A1438G C3992T A4024G A4769G T5004C G8269A A8860G G9123A T10124C T11875C G13708A C14365T A14582G T14956C A15326G CRS


H4a1a
{A2706A,C7028C → C3992T,T5004C,G9123A →A4024G,C14365T,A14582G → G8269A → A10044G}
Accession #PopulationAuthorHaplogroupHVR2Coding RegionHVR1
EU200347 FTDNA H4a A73G A263G 309.1C 315.1C C522- A523- A750G A1438G C3992T A4024G A4769G T5004C G8269A A8860G G9123A T10007C T10034C A10044G C14365T A14582G A15326G CRS
EF609015 FTDNA H4a A73G A263G 315.1C C522- A523- A750G A1438G A1656G C3992T A4024G A4769G T5004C G8269A A8860G G9123A T10007C T10034C A10044G G11440A C14365T A14582G A15326G C16184T
AY495186 European Coble H4 A73G A263G 315.1C C522- A523- A750G A1438G A1656G C3992T A4024G A4769G T5004C G8269A A8860G G9123A T10007C T10034C A10044G G11440A C14365T A14582G A15326G CRS
AY495178 European Coble H4 A73G A263G 309.1C 315.1C C522- A523- A750G A1438G C3992T A4024G A4769G T5004C G8269A A8860G G9123A A10044G C14365T A14582G A15326G CRS
AY495179 European Coble H4 A73G A263G 309.1C 315.1C C522- A523- A750G A1438G C3992T A4024G A4769G T5004C G8269A A8860G G9123A T9997C A10044G C14365T A14582G A15326G CRS
AY495181 European Coble H4 A73G A263G 309.1C 315.1C C522- A523- A750G A1438G C3992T A4024G A4769G T5004C G8269A A8860G G9123A A10044G C14365T A14582G A15326G CRS
AY495182 European Coble H4 A73G A263G 309.1C 315.1C C522- A523- A750G A1438G C3992T A4024G A4769G T5004C G8269A A8860G G9123A A10044G C14365T A14582G A15326G CRS
AY495183 European Coble H4 A73G A263G 309.1C 315.1C C522- A523- A750G A1438G C3992T A4024G A4769G T5004C G8269A A8860G G9123A A10044G T13161C C14365T A14582G A15326G CRS
AY495095 European Coble H4 A263G 315.1C A750G A1438G C3992T A4024G A4769G T5004C G8269A A8860G G9123A A10044G C14365T A14582G A15326G CRS
AY495184 European Coble H4 A73G A263G 309.1C 315.1C C522- A523- A750G A1438G C3992T A4024G A4769G T5004C T7058C G8269A A8860G G9123A A10044G C12687T C14365T A14582G G15172A A15326G CRS
AY495111 European Coble H4 A263G 315.1C A750G A1438G C3992T A4024G A4769G T5004C G8269A A8860G G9123A A10044G C14365T A14582G A15326G CRS


H4b
{A2706A,C7028C → C3992T,T5004C,G9123A → T10166C}
Accession #PopulationAuthorHaplogroupHVR2Coding RegionHVR1
AM263185 Turk Roostalu H4b T152C A263G 315.1C C522- A523- A750G A1438G C3992T A4769G T5004C A8860G G9123A T10166C A15326G T16092C
AM263184 Lezgin Roostalu H4b T152C A263G 309.1C 315.1C C522- A523- A750G A1438G C3992T A4769G T5004C A8860G G9123A T10166C A15326G G16526A

Source

Samples retrieved from Genbank with the help of Ian Logan's ONLINE ANALYSER / Database - March 2008 To Ian's Website

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results/h4/genbank.txt · Last modified: 06/22/2008 12:55 by goddess

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